SNP Profiles matching LCT EEN 412

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	GG	TT	AG	CC	CG	AA	CC	AA	AG	AT	CC
1._LCT_EEN_362	_	_	CC	GG	TT	_	CC	-	AA	CC	_	_	AT	_
2._LCT_EEN_193	_	_	CC	GG	TT	_	CC	-	AA	CC	_	_	AT	_
3._LCT_EEN_403	_	_	CC	GG	TT	_	CC	-	AA	CC	_	_	AT	_
4._LCT_EEN_415	_	_	CC	GG	TT	_	CC	-	AA	CC	_	_	AT	_
5._LCT_EEN_411	_	_	CC	GG	TT	_	CC	-	AG	CT	_	_	AT	_
6._LCT_EEN_414	_	_	CC	GG	TT	_	CC	-	AA	CC	_	_	AT	_
7._LCT_EEN_364	_	_	CC	GG	TT	_	CC	-	AA	CC	_	_	AT	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	AC	CC	GG	CG	CC	CC	CC	CC	GT	AA	TT	CC	CG
1._LCT_EEN_362	GG	AC	CC	GG	-	CC	_	CC	_	GT	_	_	_	CG
2._LCT_EEN_193	GG	AC	CC	GG	GG	CC	_	CC	_	GG	_	_	_	GG
3._LCT_EEN_403	GG	AC	CC	GG	GG	CC	_	CC	_	GT	_	_	_	CC
4._LCT_EEN_415	GG	AC	CC	GG	GG	CC	_	CC	_	GG	_	_	_	GG
5._LCT_EEN_411	GG	AC	CC	GG	CC	CC	_	CC	_	GT	_	_	_	CG
6._LCT_EEN_414	GG	AC	CC	GG	GG	CC	_	CC	_	GG	_	_	_	GG
7._LCT_EEN_364	GG	CC	CC	GG	GG	CC	_	CC	_	GG	_	_	_	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41
_Input profile	GG	TT	AA	CC	GG	GG	TT	GG	TT	CC	TT	CC	AG	X_X
1._LCT_EEN_362	GG	TT	AA	_	_	_	_	GG	_	_	TT	CC	-	X_X
2._LCT_EEN_193	GG	TT	AA	_	_	_	_	GG	_	_	TT	CC	AG	X_X
3._LCT_EEN_403	GG	TT	AA	_	_	_	_	GG	_	_	TT	CC	GG	X_X
4._LCT_EEN_415	GG	TT	AA	_	_	_	_	GG	_	_	TT	CC	AG	X_X
5._LCT_EEN_411	GG	TT	AA	_	_	_	_	GG	_	_	TT	CC	AA	X_X
6._LCT_EEN_414	CG	TT	AA	_	_	_	_	GG	_	_	TT	CC	AG	X_X
7._LCT_EEN_364	GG	TT	AA	_	_	_	_	GT	_	_	TT	CC	-	X_X

Input profile: LCT_EEN_412 RUQ_1554

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._LCT_EEN_362

identical
21 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Barbados

Dapeng Zhang, 2014

2._LCT_EEN_193

93.5 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Barbados

Dapeng Zhang, 2014

3._LCT_EEN_403

93.5 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Barbados

Dapeng Zhang, 2014

4._LCT_EEN_415

93.5 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Barbados

Dapeng Zhang, 2014

5._LCT_EEN_411

91.3 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Barbados

Dapeng Zhang, 2014

6._LCT_EEN_414

91.3 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Barbados

Dapeng Zhang, 2014

7._LCT_EEN_364

90.9 %
22 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Barbados

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1063	34	TcSNP1111	35	TcSNP1126
36	TcSNP1253	37	TcSNP1309	38	TcSNP1439	39	TcSNP1442	40	TcSNP1458
41	TcSNP1484